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Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/claude-scientific-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

Systematic Literature Review

literature-review

K-Dense-AI/claude-scientific-skills

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

Markdown Mermaid Diagram Workflow

markdown-mermaid-writing

K-Dense-AI/claude-scientific-skills

Defines a Markdown/Mermaid-first documentation skill for scientific and technical writing, providing diagram standards, 24 reference types, and templates so every report, README, or analysis stays text-first, versionable, and visualization-ready.

Consulting Grade Market Reports

market-research-reports

K-Dense-AI/claude-scientific-skills

Produces 50+-page market research dossiers with consulting-style LaTeX formatting, deep data lookups, strategic frameworks, and automated visual assets for investment and planning briefs.

Matchms Spectral Matching

K-Dense-AI/claude-scientific-skills

Matchms processes LC-MS/MS spectra with import/export tools, filtering, and multiple similarity scorers so you can identify metabolites, match libraries, and automate reproducible workflows.

Matplotlib Visualization Guide

K-Dense-AI/claude-scientific-skills

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Medchem Filtering Toolkit

K-Dense-AI/claude-scientific-skills

Medchem Filtering Toolkit is a Python library offering drug-likeness heuristics, structural alert and PAINS filters, group detection, catalogs, and complexity scoring to triage compound libraries and prioritize leads in drug discovery workflows.

Molecular Featurization Hub

K-Dense-AI/claude-scientific-skills

Molfeat is a Python toolkit that converts SMILES/RDKit molecules into embeddings via 100+ calculators, transformers, and pretrained models for QSAR, screening, similarity search, and deep learning pipelines.

Network Graph Toolkit

K-Dense-AI/claude-scientific-skills

Comprehensive Python toolkit for building, analyzing, and visualizing complex networks; supports algorithms, I/O, generation, and community detection across social, biological, transportation, and citation data.

NeuroKit2 Biosignal Processing

K-Dense-AI/claude-scientific-skills

NeuroKit2 is a Python biosignal processing toolkit for ECG, EEG, EDA, RSP, EMG, and EOG data that automates cleaning, feature extraction, and HRV/complexity analysis for psychophysiology, clinical, and HCI studies.

Neuropixels Analysis Toolkit

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

Open Targets Explorer API

opentargets-database

K-Dense-AI/claude-scientific-skills

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

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