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Total 265 skills

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ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

Ensembl Genome API

ensembl-database

K-Dense-AI/claude-scientific-skills

Query Ensembl’s RESTful API to access gene annotations, sequences, variants, orthologs, and assembly mappings across 250+ species, enabling integration into genomic research pipelines.

Phylogenetic Tree Toolkit

K-Dense-AI/claude-scientific-skills

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Scientific Data Exploration

exploratory-data-analysis

K-Dense-AI/claude-scientific-skills

Automates detection and deep exploratory analysis across 200+ scientific data formats, assessing quality, extracting metadata, and recommending visualizations while generating markdown reports that guide downstream workflows and highlight structure and distributions.

FDA Regulatory Data Access

K-Dense-AI/claude-scientific-skills

Provides Python access to openFDA endpoints for drugs, devices, foods, veterinary products, and substances, enabling regulatory analysis, safety monitoring, recalls tracking, and pharmacovigilance research.

FlowIO FCS Handler

K-Dense-AI/claude-scientific-skills

FlowIO reads and writes Flow Cytometry Standard (FCS) files, exposing metadata, channels, and NumPy event arrays while allowing CSV/DataFrame conversion, making it ideal for cytometry pipelines and backend preprocessing services.

FRED Economic Data API

fred-economic-data

K-Dense-AI/claude-scientific-skills

Access over 800,000 economic time series from FRED's API, covering GDP, employment, inflation, interest rates, regional metrics, and more; ideal for macroeconomic analysis, financial research, policymaking, and forecasting workflows.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas for geospatial vector data, enabling reading/writing shapefiles, GeoJSON, GeoPackage and PostGIS, performing CRS management, spatial joins, overlays, buffering, area/distance calculations, and producing static or interactive choropleth maps.

Genomic Interval Toolkit

K-Dense-AI/claude-scientific-skills

High-performance Rust toolkit with Python bindings for genomic interval analysis, covering overlap detection, coverage track generation, ML tokenization, reference sequence handling, fragment processing, and scoring workflows for sequencing datasets.

GWAS Catalog Access

K-Dense-AI/claude-scientific-skills

Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, fetch study metadata, variant and trait details, and download summary statistics via the web or REST APIs to support genetic epidemiology and polygenic risk modeling.

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