Skill UI

This skill acts as a comprehensive map for developing clinical and biomedical NLP pipelines using OpenMed. OpenMed is a local-first Python library that performs named-entity recognition (NER), protected health information (PHI) de-identification, and FHIR export, all running fully on-device without cloud calls. Use this guide when starting a new clinical text project, needing to select the appropriate capability (e.g., zero-shot NER, auditing, or FHIR conversion), or requiring an entry point for the core OpenMed features.

Utilizes OpenMed's analyze_text to perform sophisticated Named-Entity Recognition (NER) on clinical and biomedical text. This tool extracts structured entities such as diseases, drugs, anatomy, genes, and proteins. It provides precise character spans and model confidence scores, making it essential for building robust, privacy-first clinical Natural Language Processing (NLP) pipelines.

Search and read biomedical papers, regulatory documents, clinical trials, and protein databases via the Paperclip CLI, with semantic search, SQL, map/reduce, and line-pinned citations.

A systematic workflow for conducting literature reviews across academic, biomedical, technical, and scientific topics. Includes search planning, source screening, synthesis, citation verification, and evidence logging.