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Search Biomedical , found 23 results

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DNAnexus Cloud Genomics

dnanexus-integration

K-Dense-AI/claude-scientific-skills

Integrate with the DNAnexus cloud genomics platform to build apps/applets, manage FASTQ/BAM/VCF data, run workflows, and script automations via dxpy for biomedical pipelines.

Systematic Literature Review

literature-review

K-Dense-AI/claude-scientific-skills

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

TorchDrug GNN Toolkit

K-Dense-AI/claude-scientific-skills

TorchDrug is a PyTorch-native toolbox for building graph neural networks tailored to molecules, proteins, and biomedical knowledge graphs, covering property prediction, generation, retrosynthesis, and knowledge graph reasoning with curated datasets and models.

Cross-Database Research

database-lookup

K-Dense-AI/claude-scientific-skills

Leverages 78 public scientific, biomedical, materials, and economic REST APIs to find compounds, genes, pathways, clinical trials, patents, economic indicators, weather, and other structured data, returning raw JSON plus the databases/endpoints used.

PyTorch Training Recipes

ml-training-recipes

Orchestra-Research/AI-Research-SKILLs

Collection of battle-tested PyTorch training recipes covering architecture selection, optimizers, LR scheduling, precision tips, and debugging to train or fine-tune LLMs, vision, diffusion, and biomedical models with high GPU throughput.

Biomedical Literature Search Using PubMed API

pubmed-database

affaan-m/everything-claude-code

This guide provides a comprehensive workflow for searching and retrieving biomedical literature from PubMed and NCBI. It covers advanced query construction using MeSH terms and specific field tags, advanced filtering (date, publication type), and a repeatable programmatic workflow using NCBI E-utilities (esearch, efetch). Essential for researchers conducting systematic reviews and literature monitoring.

Brain Imaging Data Structure Management

K-Dense-AI/scientific-agent-skills

The BIDS skill provides a comprehensive framework for organizing, standardizing, and managing complex neuroscience and biomedical datasets. It covers querying, validating, and converting various modalities (MRI, EEG, MEG, etc.) to ensure compliance with the BIDS standard for research reproducibility and efficient data sharing.

Deterministic Research Search Across Corpora

sickn33/antigravity-awesome-skills

A powerful tool for deterministic and reproducible retrieval of evidence from specialized academic and policy corpora. It supports searching arXiv (preprints), PubMed/PMC (biomedical literature), and US policy documents. Users can check corpus freshness, retrieve stable metadata, and fetch full-document Markdown for high-reliability research tasks.

Biomedical Literature Search Using PubMed API

pubmed-database

This guide provides a comprehensive workflow for searching and retrieving biomedical literature from PubMed and NCBI. It covers advanced query construction using MeSH terms and specific field tags, advanced filtering (date, publication type), and a repeatable programmatic workflow using NCBI E-utilities (esearch, efetch). Essential for researchers conducting systematic reviews and literature monitoring.

Guiding Advanced Functional Materials Submission

advanced-functional-materials

brycewang-stanford/Awesome-Journal-Skills

This tool guides authors on whether their manuscript fits the scope of Advanced Functional Materials. It emphasizes the critical structure-function-application chain, covering highly advanced fields such as optoelectronics, biomedical devices, and soft robotics. It provides criteria for methodology, required evidence, and journal-specific house style.

Guide to Scientific Manuscript Revision

cc-peer-review-revision

brycewang-stanford/Awesome-Journal-Skills

A comprehensive guide for authors responding to major or minor revisions following peer review. It details how to systematically triage reviewer reports, plan rigorous new in vivo or human experiments, structure point-by-point rebuttal letters, and maintain scientific rigor while narrowing claims. Designed for biomedical research and academic publishing.

Positioning Papers for Biomedical Imaging Conferences

ieee-international-symposium-on-biomedical-imaging

brycewang-stanford/Awesome-Journal-Skills

This skill provides a comprehensive guide for authors submitting papers in biomedical imaging algorithms, microscopy, and medical imaging to top-tier conferences like ISBI. It helps authors strategically frame their work, assess scope fit, ensure strong evidence, and understand the unique requirements of the venue, ensuring the manuscript is optimized for conference review standards.

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