scvi-tools
K-Dense-AI/scientific-agent-skills
A comprehensive Python framework utilizing deep generative models and variational inference for advanced single-cell genomics analysis. It supports the integration and analysis of diverse multi-modal data types, including single-cell RNA-seq, ATAC-seq, CITE-seq, and spatial transcriptomics. Key applications include probabilistic batch correction, cell type annotation, and multi-omics integration.
