Skill UI

Access HMDB to search over 220K human metabolites by name, ID, structure, disease or specimen, retrieve chemical/clinical/pathway data, and download spectra for metabolomics workflows.

Direct Python helpers for KEGG's REST API, covering database metadata, listing, search, retrieval, ID conversion, linkage, and drug interactions to power pathway and gene analysis.

Query the NIH Metabolomics Workbench via REST API to fetch metabolites, RefMet nomenclature, mass-spec searches, and detailed study datasets for biomarker discovery and metabolomics research.

Use the OpenAlex client to query 240M+ scholarly works for literature searches, citation tracking, open access discovery, and bibliometric studies across papers, authors, and institutions.

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

Access RCSB PDB to search biomolecular structures via text, sequence, or geometry queries, download coordinate files in PDB/mmCIF/Binary formats, retrieve metadata, and batch-process entries for drug discovery, protein engineering, and structural biology pipelines.

Query the Reactome Content and Analysis Services (or the reactome2py client) to fetch pathway hierarchies, map genes, run overrepresentation/expression analyses, and explore disease interactions for systems biology research.

Direct REST API access to UniProt for searching proteins, fetching FASTA sequences, mapping identifiers, selecting annotations, and streaming large datasets within Python workflows.

This skill provides comprehensive functionality for querying, comparing, and calculating nutritional data from a structured food database. Users can perform precise searches by food name or nutritional criteria (e.g., high protein, low GI). It supports calculating total nutrient intake based on specific portions, suggesting foods for various health conditions (like diabetes or high blood pressure), and performing detailed comparative analysis between multiple food items.

A comprehensive tool for interacting with the arXiv database. It allows users to search for academic papers by topic or ID, retrieve detailed metadata (abstracts, authors, categories), and download the PDF files directly. Ideal for researchers and students needing to efficiently find, save, and summarize scientific literature.

This advanced skill systematically verifies the novelty of a proposed academic method or research idea against the latest scientific literature. It performs multi-source searches across databases like arXiv, Google Scholar, and major conference proceedings (ICML, NeurIPS). Using a multi-step process, it extracts core claims, searches multiple sources, performs cross-model verification via LLM, and outputs a structured Novelty Report, detailing overlap, prior work, and overall recommendation.

Provides direct REST API access to UniProt, the premier resource for protein sequence and functional information. This skill enables users to search proteins by name, gene, or accession number, retrieve sequences in FASTA format, perform cross-database ID mapping (e.g., Ensembl, RefSeq), and analyze functional annotations (GO terms) for building comprehensive bioinformatics pipelines.