Skill UI

A powerful tool for scientific literature review and evidence synthesis. This skill searches a curated database of full-text scientific papers, going beyond traditional abstracts. It extracts and returns highly structured, quantitative data, including methodologies, quantitative results, sample sizes, quality scores, and 25+ metadata fields per paper, making it ideal for meta-analyses and systematic reviews.

A comprehensive Python package providing a unified interface to over 40 major bioinformatics web services and databases. Use it for complex biological workflows, including cross-database querying (e.g., UniProt, KEGG, ChEMBL), identifier mapping, protein sequence retrieval, pathway analysis, and running sequence similarity searches like BLAST. It streamlines data integration from multiple life science resources into consistent Python code.

gget is a comprehensive command-line tool and Python package offering unified access to over 20 genomic databases. It facilitates quick lookups for gene information, sequence analysis (BLAST), protein structures, and expression data, supporting both interactive CLI use and advanced programmatic Python workflows for biological research.

This skill provides programmatic access to the PrimeKG, a comprehensive knowledge graph integrating over 20 primary databases. It facilitates multiscale biological research by mapping complex relationships between genes, drugs, diseases, and phenotypes. Use it for drug repurposing, identifying novel disease targets, and analyzing molecular mechanisms across various biological scales.

This skill guides the systematic process of conducting comprehensive academic literature reviews. It allows users to search multiple biomedical, scientific, and technical databases (e.g., PubMed, arXiv, Semantic Scholar) to synthesize current knowledge. The output generates professionally formatted reports (Markdown/PDF) with verified citations, and mandatorily integrates AI-generated scientific schematics to enhance visualization and depth, suitable for research papers, meta-analyses, and state-of-the-art reports.

This skill integrates ten major academic databases (including PubMed, arXiv, OpenAlex, and Semantic Scholar) via REST APIs. It enables comprehensive searches for scholarly articles, preprints, citations, and full-text access across various fields. Use this when searching for research papers on a topic, looking up specific DOIs/PMIDs, or needing global literature metadata.

Provides a systematic guide for diagnosing and improving poor search quality in vector databases like Qdrant. This guide covers troubleshooting issues such as low recall, when approximate search degrades, selecting optimal embedding models, and correctly tuning HNSW parameters, quantization, and filtering strategies. Essential for optimizing RAG and semantic search pipelines.

This skill performs a structured Systematic Literature Review (SLR) by analyzing multiple academic papers on a given topic. It searches academic databases (like arXiv), extracts structured metadata (research questions, methodologies, key findings, limitations) from the entire set of papers, and synthesizes overarching themes and research trends. It is ideal for creating comprehensive literature surveys, annotated bibliographies, and cross-paper comparisons, outputting reports in professional citation formats like APA, IEEE, or BibTeX.

This guide provides a comprehensive workflow for searching and retrieving biomedical literature from PubMed and NCBI. It covers advanced query construction using MeSH terms and specific field tags, advanced filtering (date, publication type), and a repeatable programmatic workflow using NCBI E-utilities (esearch, efetch). Essential for researchers conducting systematic reviews and literature monitoring.

Provides a structured workflow for systematically accessing and analyzing official intellectual property data from the USPTO. This skill covers patent search (PatentSearch API), trademark status checks (TSDR), ownership transfer tracking, and building reproducible IP landscape logs. It is designed for data collection and record verification, emphasizing the use of official APIs and rigorous logging practices. (Warning: Not for legal advice.)

A comprehensive skill for interacting with Weaviate vector databases. It enables advanced operations including semantic search, hybrid keyword querying, schema inspection, data exploration, collection creation, and bulk data import (CSV, JSON, PDF). Use this skill when you need to query data conceptually, retrieve specific raw objects, or manage the lifecycle of Weaviate collections.