Skill UI

Generates publication-ready clinical decision support documents for pharma and clinical research, covering biomarker-stratified cohort analysis, evidence-graded treatment recommendations, statistical comparisons, and regulatory-ready LaTeX/PDF outputs.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

Plotly is a Python graphing library for interactive, publication-quality visuals that bring hover, zoom, animation, and dashboard-ready exports to exploratory analysis and presentations.

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

Transforms data into publication-ready figures with multi-panel layouts, precise annotations, colorblind-friendly palettes, and journal formatting using matplotlib, seaborn, and plotly plus export helpers for PDF/EPS/TIFF.

Seaborn is a powerful Python library for creating publication-quality statistical graphics. It is designed for dataset-oriented plotting, making it ideal for exploratory data analysis, multivariate analysis, and visualizing complex relationships, distributions, and comparisons with minimal code. It builds upon Matplotlib, offering high-level interfaces for functions like scatterplots, heatmaps, and pair plots.

A comprehensive guide for systematic statistical analysis, designed for academic research. This skill assists in selecting the correct hypothesis tests (t-test, ANOVA, regression, chi-square), checking assumptions (normality, homogeneity), performing advanced analyses (Bayesian methods, power analysis), calculating effect sizes, and generating full APA-formatted reports for publication.

Statsmodels is a comprehensive Python library dedicated to advanced statistical modeling and econometrics. It provides tools for rigorous statistical inference, including Ordinary Least Squares (OLS), Generalized Linear Models (GLM), mixed-effects models, and time series analysis (ARIMA). Use this skill for detailed diagnostics, coefficient estimation, hypothesis testing, and producing publication-ready statistical reports in fields like econometrics and biostatistics.

This skill automates the generation of high-quality, publication-ready figures and comparison tables from raw experimental data (CSV, JSON, etc.). It supports various plot types, including line plots, bar charts, scatter plots, heatmaps, and box plots, ensuring consistent style (DPI 300, PDF format) suitable for academic submissions. Users provide a figure plan and raw data, and the system generates the necessary code to visualize results.

A comprehensive tool for generating publication-quality figures essential for Machine Learning and AI academic papers. It supports two distinct workflows: generating complex system architecture and workflow diagrams using AI (Gemini), and creating precise, data-driven visualizations (line charts, heatmaps, etc.) using standard libraries like matplotlib and seaborn. Use it when preparing any figure for a conference submission.