Skill UI

This skill provides comprehensive guidance on leveraging d3.js (Data-Driven Documents) to create sophisticated, interactive, and publication-quality data visualizations. It covers core concepts like data binding, implementing various chart types (network graphs, geo-maps, etc.), handling complex transitions, and ensuring responsiveness across modern JavaScript frameworks (React, Vue, Vanilla JS). Learn the standard workflow for scale definition, axis creation, and drawing custom visual elements with fine-grained control.

Guides researchers through drafting publication-ready machine learning papers for NeurIPS, ICML, ICLR, ACL, AAAI, and COLM by combining expert writing philosophy with LaTeX templates, citation verification APIs, and collaborative workflows.

Generates publication-ready clinical decision support documents for pharma and clinical research, covering biomarker-stratified cohort analysis, evidence-graded treatment recommendations, statistical comparisons, and regulatory-ready LaTeX/PDF outputs.

Denario orchestrates a multi-agent AI to automate research workflows, covering idea generation, methodology development, computational experiments, and LaTeX publication output.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Generates professional infographics by describing your idea, combining Nano Banana Pro AI generation with Gemini 3 Pro quality review and optional Perplexity Sonar research to ensure accurate, publication-ready visuals for marketing, reports, social, or internal use.

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Plotly is a Python graphing library for interactive, publication-quality visuals that bring hover, zoom, animation, and dashboard-ready exports to exploratory analysis and presentations.

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

Use Nano Banana 2 plus Gemini 3.1 Pro Preview to iteratively craft publication-quality scientific schematics—neural nets, pathways, or system diagrams—matching document-type quality thresholds.