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ClinPGx Database Access

clinpgx-database

K-Dense-AI/claude-scientific-skills

Provide REST API access to ClinPGx, the successor to PharmGKB, for querying gene-drug interactions, CPIC/DPWG/FDA guidelines, allele functions, and evidence that supports precision dosing and pharmacogenomics-driven clinical decisions.

COSMIC Mutation Access

cosmic-database

K-Dense-AI/claude-scientific-skills

Programmatic access to the COSMIC cancer mutation database for downloading mutations, Cancer Gene Census, mutational signatures, fusions, copy number, expression, and resistance data to fuel oncology research or bioinformatics pipelines after authentication.

Distributed Dask Workflows

K-Dense-AI/claude-scientific-skills

Dask enables larger-than-memory pandas/NumPy workflows through parallel, distributed execution across dataframes, arrays, bags, and futures, making it ideal for scaling ETL, analytics, or custom computations across cores or clusters.

ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

Phylogenetic Tree Toolkit

K-Dense-AI/claude-scientific-skills

ETE Toolkit offers comprehensive phylogenetic tree manipulation, evolutionary event detection, taxonomy integration, and publication-grade visualization for phylogenomics workflows across research and clustering analyses.

FRED Economic Data API

fred-economic-data

K-Dense-AI/claude-scientific-skills

Access over 800,000 economic time series from FRED's API, covering GDP, employment, inflation, interest rates, regional metrics, and more; ideal for macroeconomic analysis, financial research, policymaking, and forecasting workflows.

GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

Gtars Genomic Toolkit

K-Dense-AI/claude-scientific-skills

Gtars is a high-performance Rust toolkit with Python bindings for genomic interval analysis, covering overlap detection, coverage track generation, ML tokenization, fragment scoring, and reference sequence management for computational genomics workflows.

GWAS Catalog Access

K-Dense-AI/claude-scientific-skills

Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, fetch study metadata, variant and trait details, and download summary statistics via the web or REST APIs to support genetic epidemiology and polygenic risk modeling.

OFR Hedge Fund Monitor

hedgefundmonitor

K-Dense-AI/claude-scientific-skills

Access aggregated OFR hedge fund time series and metadata without auth, covering Form PF stats, repo volumes, futures trader positioning, and leverage/counterparty metrics for risk monitoring or research.

Human Metabolome Explorer

K-Dense-AI/claude-scientific-skills

Access HMDB to search over 220K human metabolites by name, ID, structure, disease or specimen, retrieve chemical/clinical/pathway data, and download spectra for metabolomics workflows.

Scientific Hypothesis Generation

hypothesis-generation

K-Dense-AI/claude-scientific-skills

Guides structured, testable scientific hypothesis creation from observations and literature; ideal for experiment design, mechanistic exploration, and predictive planning across domains while integrating mandatory AI-generated schematics.

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