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ChEMBL Bioactivity Query

chembl-database

K-Dense-AI/claude-scientific-skills

Programmatically query ChEMBL bioactive molecules, targets, and approved drugs via the Python client; filter by structure, properties, activities, and indications to support inhibitor hunting or SAR studies for medicinal chemistry.

DrugBank Database Insights

drugbank-database

K-Dense-AI/claude-scientific-skills

Provides programmatic access to DrugBank drug and target data, covering downloads, queries, interaction networks, targets/pathways, and chemical similarity analyses for pharmacology research and safety reviews.

Scientific Data Exploration

exploratory-data-analysis

K-Dense-AI/claude-scientific-skills

Automates exploratory analysis for 200+ scientific file formats—detecting type, extracting metadata, assessing quality, and producing markdown reports with format-specific insights and recommendations.

FDA Regulatory Data Access

K-Dense-AI/claude-scientific-skills

Provides Python access to openFDA endpoints for drugs, devices, foods, veterinary products, and substances, enabling regulatory analysis, safety monitoring, recalls tracking, and pharmacovigilance research.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

OFR Hedge Fund Monitor

hedgefundmonitor

K-Dense-AI/claude-scientific-skills

Access aggregated OFR hedge fund time series and metadata without auth, covering Form PF stats, repo volumes, futures trader positioning, and leverage/counterparty metrics for risk monitoring or research.

Mass Spectra Matching

K-Dense-AI/claude-scientific-skills

Matchms is an open-source Python toolkit for metabolomics mass spectrometry workflows: import and export diverse spectra, standardize metadata, filter peaks, score spectral similarity (cosine/modified cosine), and build pipelines to identify unknown compounds from libraries.

Molecular Featurization Hub

K-Dense-AI/claude-scientific-skills

Molfeat is a Python hub for turning SMILES or RDKit molecules into 100+ featurizers and pretrained embeddings, powering QSAR, screening, similarity, and deep learning workflows with transformers, calculators, caching, and parallel processing.

Biosignal Processing Toolkit

K-Dense-AI/claude-scientific-skills

NeuroKit2 is a Python toolkit for processing ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals, making it easy to derive HRV, ERP, complexity, autonomic, and multimodal assessments for psychophysiology research and clinical integrations.

Neuropixels Recording Analysis

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

Toolkit for Neuropixels neural recording analysis that loads SpikeGLX/Open Ephys/NWB data, preprocesses, corrects motion, runs Kilosort4/alternative sorters, computes quality metrics, curates units via Allen/IBL criteria, renders visualizations, and exports to Phy or NWB for publication-ready results.

Open Targets Explorer API

opentargets-database

K-Dense-AI/claude-scientific-skills

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

Plotly Interactive Charts

K-Dense-AI/claude-scientific-skills

Plotly is a Python graphing library for interactive, publication-quality visuals that bring hover, zoom, animation, and dashboard-ready exports to exploratory analysis and presentations.

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