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Search Bioinformatics , found 14 results

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Biopython Molecular Toolkit

K-Dense-AI/claude-scientific-skills

Biopython provides Python APIs for sequence manipulation, database access, BLAST automation, structural bioinformatics, and phylogenetics, making it ideal for scripting custom pipelines and batch processing in computational molecular biology workflows.

BioServices Cross-DB API

K-Dense-AI/claude-scientific-skills

BioServices provides Python wrappers for 40+ bioinformatics services, allowing cross-database queries, identifier mapping, pathway exploration, and sequence or compound research within consistent workflows.

COSMIC Mutation Access

cosmic-database

K-Dense-AI/claude-scientific-skills

Programmatic access to the COSMIC cancer mutation database for downloading mutations, Cancer Gene Census, mutational signatures, fusions, copy number, expression, and resistance data to fuel oncology research or bioinformatics pipelines after authentication.

ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

Unified Bioinformatics Query

K-Dense-AI/claude-scientific-skills

gget is a CLI/Python client that unifies querying over 20+ bioinformatics databases, letting researchers fetch gene info, sequences, BLAST results, structures, and enrichment data interactively or within scripts.

Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/claude-scientific-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

Microbiome Bioinformatics Toolkit

K-Dense-AI/claude-scientific-skills

scikit-bio provides a Python-native biological data toolkit for reading/writing FASTA/Newick files, manipulating sequences, building alignments and phylogenies, and calculating diversity metrics for microbiome and ecology workflows.

Polars Bio Genomics Toolkit

K-Dense-AI/claude-scientific-skills

polars-bio accelerates genomic interval math and bioinformatics I/O by combining Polars, Arrow, and DataFusion to handle BED/VCF/BAM/GFF/FASTA streams, SQL queries, and cloud storage with overlap, coverage, and nearest APIs plus streaming fallbacks.

Biopython Molecular Toolkit

K-Dense-AI/scientific-agent-skills

Biopython provides Python APIs for sequence manipulation, database access, BLAST automation, structural bioinformatics, and phylogenetics, making it ideal for scripting custom pipelines and batch processing in computational molecular biology workflows.

BioServices Cross-DB API

K-Dense-AI/scientific-agent-skills

BioServices provides Python wrappers for 40+ bioinformatics services, allowing cross-database queries, identifier mapping, pathway exploration, and sequence or compound research within consistent workflows.

Unified Bioinformatics Query

K-Dense-AI/scientific-agent-skills

gget is a CLI/Python client that unifies querying over 20+ bioinformatics databases, letting researchers fetch gene info, sequences, BLAST results, structures, and enrichment data interactively or within scripts.

Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/scientific-agent-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

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