Skill UI

The ETE Toolkit is a powerful Python library designed for analyzing, manipulating, comparing, and visualizing phylogenetic trees stored in Newick or Nexus formats. It allows users to perform topology edits, calculate phylogenetic distances (e.g., Robinson-Foulds), detect evolutionary events, and query external taxonomic databases like NCBI/GTDB. Note that this tool analyzes existing trees; it is not used for inferring trees from raw sequences.

A comprehensive skill implementing the GTD weekly review process. It guides users through three deterministic phases (Get Clear, Get Current, Get Creative) to audit open loops, check project commitments, and ensure the personal system remains trustworthy. It helps users close open loops, audit stalled projects, and maintain a reliable organizational workflow.