Skill UI

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

Run and analyze molecular dynamics simulations using OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, perform energy minimization, NVT equilibration, production MD, and analyze trajectories including RMSD, RMSF, contact maps, and free energy surfaces.

This minimal example demonstrates the structure of an MDA source file, including advanced frontmatter fields (metadata) and how to properly implement relationship-graph footnotes. It serves as a crucial reference fixture for users learning the MDA source format.

This technical skill is designed to verify the compatibility of the Codex CLI with skills compiled from MDA source. Loading this skill confirms that the CLI loader successfully parses the SKILL.md format, adhering to the agentskills.io v1 envelope subset. It is primarily used for testing build pipelines, metadata integrity, and ensuring robust compatibility between MDA compilation and runtime ingestion.

This skill serves as a compatibility demonstration to verify that the Hermes Agent can successfully parse and load an SKILL.md file generated from an MDA source. It confirms that the compiled structure, including specific frontmatter and reserved metadata namespaces, survives the round-trip compilation process, ensuring structural integrity for the agent's skill registry.

This demo skill verifies the compatibility of MDA-compiled SKILL.md files within the Claude Code environment. It confirms that the skill's frontmatter, metadata structure, and allowed tools are correctly parsed and honored by the loader, ensuring smooth integration of compiled content into the agent workspace. It is a technical utility for development validation.

This skill serves as a compatibility test to ensure that skills compiled from MDA (Metadata Definition Architecture) sources are correctly recognized and installed by the OpenClaw platform. It validates the integrity of the skill loading process, confirming successful parsing and integration.

This skill demonstrates OpenCode's compatibility with MDA-compiled SKILL.md files. It verifies that the loader correctly parses crucial frontmatter fields (like name, description, and metadata) after the source has gone through the MDA compilation process, ensuring robust skill integration and data integrity.