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Metabolomics
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Human Metabolome Explorer
hmdb-database
K-Dense-AI/claude-scientific-skills
492
Access HMDB to search over 220K human metabolites by name, ID, structure, disease or specimen, retrieve chemical/clinical/pathway data, and download spectra for metabolomics workflows.
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Metabolomics Workbench API
metabolomics-workbench-database
K-Dense-AI/claude-scientific-skills
465
Query the NIH Metabolomics Workbench via REST API to fetch metabolites, RefMet nomenclature, mass-spec searches, and detailed study datasets for biomarker discovery and metabolomics research.
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PyOpenMS Mass Spectrometry
pyopenms
K-Dense-AI/claude-scientific-skills
263
PyOpenMS provides Python bindings for OpenMS to drive complete mass spectrometry workflows, covering data IO, spectral processing, feature/peptide-protein identification, quantitation, and metabolomics pipelines.
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