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Search RNA-Seq , found 16 results

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ORM Code Generator

generating-orm-code

jeremylongshore/claude-code-plugins-plus-skills

Generates ORM models and database schemas for frameworks like TypeORM, Prisma, Sequelize, SQLAlchemy, Django ORM, Entity Framework, and Hibernate, translating user requests into ready-to-use model code or schema definitions to accelerate backend development.

Arboreto GRN Inference

K-Dense-AI/claude-scientific-skills

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

NGS Data Visualization

K-Dense-AI/claude-scientific-skills

deepTools is a Python command-line suite for NGS workflows, converting BAM files into normalized coverage, running QC (fingerprint, correlation, PCA), comparing samples, and rendering heatmaps or profiles for ChIP-seq, RNA-seq, and ATAC-seq analyses.

ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/claude-scientific-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

PyDESeq2 Differential Analysis

K-Dense-AI/claude-scientific-skills

PyDESeq2 brings the DESeq2 differential expression workflow to Python, letting users load bulk RNA-seq counts, specify design formulas, fit DESeq2 models, run Wald tests with FDR correction, optionally apply apeGLM shrinkage, and export gene-level statistics within pandas/AnnData pipelines.

Scanpy Single-Cell Workflow

K-Dense-AI/claude-scientific-skills

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

scVelo RNA Velocity Workflow

K-Dense-AI/claude-scientific-skills

Provide a comprehensive toolkit for RNA velocity inference in single-cell RNA-seq data, modeling unspliced/spliced kinetics to infer differentiation directions, latent time, and driver genes while complementing Scanpy pipelines.

YES AI Governance Guide

sickn33/antigravity-awesome-skills

YES.md is an AI governance engine that layers safety gates, evidence-based debugging, anti-slack detection, and machine-enforced hooks so assistants verify fixes, avoid guesses, and document consequences before touching configs, deployments, or sensitive data.

Architecture Decision Records

architecture-decision-records

affaan-m/everything-claude-code

Automatically capture architecture decisions during Claude Code sessions as structured ADRs, tracking context, alternatives, and consequences so future developers understand why the codebase looks the way it does.

Arboreto GRN Inference

K-Dense-AI/scientific-agent-skills

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

NGS Data Visualization

K-Dense-AI/scientific-agent-skills

deepTools is a Python command-line suite for NGS workflows, converting BAM files into normalized coverage, running QC (fingerprint, correlation, PCA), comparing samples, and rendering heatmaps or profiles for ChIP-seq, RNA-seq, and ATAC-seq analyses.

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