Skill UI

Query the Reactome Content and Analysis Services (or the reactome2py client) to fetch pathway hierarchies, map genes, run overrepresentation/expression analyses, and explore disease interactions for systems biology research.

This skill specializes in generating visual representations of complex logic flows, particularly within finance. It creates Draw.io XML compatible diagrams, making it ideal for visualizing investment theses, signal transmission chains, or complex financial models for clear communication and analysis.

Converts genomic intervals across BED, GFF/GTF, VCF, SAM/BAM, WIG and other conventions, normalizes and compares variant representations, and detects assembly or contig-naming mismatches before they corrupt an analysis.

This skill guides authors in assessing whether their scholarly work—particularly those employing New Historicism or interdisciplinary cultural analysis—is suitable for highly specialized academic venues. It emphasizes the necessity of building arguments outward from concrete historical or material particulars (like archival fragments or objects), rather than relying on free-floating theory. Use this aid to re-frame and strengthen the material basis of your scholarly manuscript before submission.

Plotly is a Python library for creating interactive, publication-quality visualizations with over 40 chart types. Ideal for dashboards, exploratory analysis, and presentations requiring hover, zoom, and pan features. Supports both high-level Plotly Express and low-level Graph Objects APIs for flexible data representation.