Skill UI

This skill allows users to build comprehensive attack trees to systematically visualize complex threat paths. It is essential for mapping potential attack scenarios, identifying critical defense gaps, prioritizing security investments, and communicating detailed security risks to non-technical stakeholders.

This skill allows users to build comprehensive attack trees to systematically visualize complex threat paths. It is essential for mapping potential attack scenarios, identifying critical defense gaps, prioritizing security investments, and communicating detailed security risks to non-technical stakeholders.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

This skill enables the construction and analysis of phylogenetic trees using tools like MAFFT for alignment, IQ-TREE 2 for maximum likelihood inference, and FastTree for large datasets. It supports evolutionary analysis, microbial genomics, viral phylodynamics, and molecular clock studies. Visualization is handled via ETE3 or FigTree. Ideal for inferring evolutionary relationships, detecting horizontal gene transfer, and reconstructing ancestral sequences in biological research.

A comprehensive skill for AI agents to perform advanced filesystem operations. It provides features for intelligent file listing with deep filtering, powerful content and pattern searching, safe batch file copying, and detailed directory analysis (statistics, tree visualization). Ideal for code analysis, system auditing, and managing project assets.