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European Nucleotide Archive Access

davila7/claude-code-templates

Retrieve DNA/RNA sequences, raw reads, genome assemblies, and metadata from the European Nucleotide Archive via REST APIs and FTP for genomics and bioinformatics pipelines.

Ensembl Genome Database API

ensembl-database

davila7/claude-code-templates

Query the Ensembl REST API for over 250 species to retrieve genes, sequences, variants, orthologs, regulatory features, VEP predictions, and assembly mappings for genomic research.

Development Environment Setup Guide

environment-setup-guide

davila7/claude-code-templates

This skill assists developers in configuring complete development environments from scratch. It provides step-by-step instructions for installing tools, managing dependencies, setting environment variables, and verifying setups across different operating systems like Windows, macOS, and Linux. Ideal for new projects, onboarding, or troubleshooting.

Systematic Error Diagnosis and Resolution

davila7/claude-code-templates

A systematic approach to diagnosing and resolving errors across all programming languages and frameworks. It utilizes a five-step process (Classify, Parse, Match, Analyze, Resolve) to identify root causes and generate actionable solutions. Includes a replay system to record and reuse successful fixes for future reference.

Ethical Hacking Methodology

ethical-hacking-methodology

davila7/claude-code-templates

Guides learners through reconnaissance, scanning, vulnerability analysis, exploitation, and reporting phases of authorized penetration testing, pairing command examples with tool choices and professional deliverables.

AI System Evaluation Engineering

davila7/claude-code-templates

Master the art of evaluating AI, LLM, and agent systems. Learn to decide when an evaluation is needed, design robust experiments, choose appropriate graders, and interpret results under hostile audit. Covers everything from spot checks to CI gates and benchmarking.

Build Fine-Tuning Eval Harness

eval-harness-first

wshobson/agents

Builds the Phase 0 evaluation harness that gates every fine-tuning run: golden sets from trace error analysis, per-failure-mode graders, calibrated LLM judges, drift suite, and base-model baseline.

Code Model Evaluation Harness

evaluation-bigcode-evaluation-harness

davila7/claude-code-templates

This tool benchmarks code generation models across 15+ industry-standard benchmarks like HumanEval and MBPP. It supports multi-language evaluation (18+ languages) and measures performance using pass@k metrics. Ideal for comparing coding abilities, testing multi-language support, and validating code generation quality for AI models.

LLM Evaluation Harness

evaluation-lm-evaluation-harness

davila7/claude-code-templates

This tool evaluates Large Language Models across 60+ academic benchmarks like MMLU, GSM8K, and HumanEval. It is an industry standard used by major labs for benchmarking model quality, comparing models, and tracking training progress. Supports HuggingFace, vLLM, and APIs. Ideal for researchers and developers validating AI performance.

Plugin Quality Evaluation Methodology

evaluation-methodology

wshobson/agents

This skill details the PluginEval quality methodology, covering scoring dimensions, rubrics, and formulas. It explains evaluation layers including static linting, LLM judging, and Monte Carlo simulations. Use it to understand quality measurement, interpret scores, improve triggering accuracy, set thresholds, or explain badges to partners.

NeMo Evaluator Benchmarking SDK

evaluation-nemo-evaluator

davila7/claude-code-templates

Runs reproducible LLM evaluations across 100+ benchmarks and 18+ harnesses with Docker, Slurm HPC, and cloud backends.

Event Sourcing Architect

event-sourcing-architect

davila7/claude-code-templates

Expert in event sourcing, CQRS, and event-driven architecture patterns. Masters event store design, projection building, saga orchestration, and eventual consistency patterns. Ideal for systems requiring complete audit trails, complex business workflows, temporal queries, or event-driven microservices architectures. Supports undo/redo capabilities and time-travel debugging.

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