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AI Image Generator

K-Dense-AI/scientific-agent-skills

Generate or edit high-quality photos, illustrations, and visual assets using OpenRouter models like Gemini 3.1 Flash and Flux 2 Pro; configure the API key once, then run the scripts for prompts, edits, or batch outputs for presentations, marketing, or general creative needs.

GeoMaster Earth Observation Suite

K-Dense-AI/scientific-agent-skills

GeoMaster is a comprehensive geospatial science skill that guides remote sensing, GIS, spatial analysis, and machine learning workflows for Earth observation and planetary data projects, covering satellite imagery, vector/raster math, point clouds, terrain, hydrology, and cloud-native data stacks.

Ginkgo Cloud Lab Automation

ginkgo-cloud-lab

K-Dense-AI/scientific-agent-skills

Submit and manage autonomous lab protocols on Ginkgo Cloud Lab, leveraging RACs for cell-free protein expression validation/optimization, fluorescent pixel art, EstiMate AI assessments, and guided ordering of sample inputs through the web interface.

Glycoengineering Toolkit

glycoengineering

K-Dense-AI/scientific-agent-skills

Analyzes protein sequences to locate canonical N-glycosylation sequons, predict O-glycosylation hotspots, and mutate or design glycosylation sites for therapeutic proteins, vaccines, and biosimilar comparisons using curated glycoengineering resources.

Automated Hypothesis Discovery

K-Dense-AI/scientific-agent-skills

Hypogenic automates LLM-driven hypothesis generation and testing over tabular datasets, blending literature insights with empirical analysis to accelerate discovery in domains like deception detection or AI content evaluation.

Scientific Hypothesis Formulation

hypothesis-generation

K-Dense-AI/scientific-agent-skills

Guides structured hypothesis generation by combining literature searches, evidence synthesis, competing explanations, and experimental design, with mandatory AI-generated scientific schematics for complete reports.

Codebase Gap Analysis and Validation

kiro-validate-gap

This skill analyzes the implementation gap by comparing approved feature requirements against the existing codebase, architecture, and context. It helps identify missing capabilities, potential integration challenges, and necessary technical research areas. The output provides multiple viable implementation options and a comprehensive analysis report, guiding the transition from requirements definition to technical design.

LabArchives API Workflow

labarchive-integration

K-Dense-AI/scientific-agent-skills

Integrates with the LabArchives ELN API to programmatically manage notebooks, entries, attachments, backups, reports, and third-party tools (Protocols.io, Jupyter, REDCap) for research workflow automation.

LaminDB Biological Data Platform

K-Dense-AI/scientific-agent-skills

LaminDB is a Python-driven open-source framework for managing biological datasets, ensuring traceable, reproducible, FAIR data through lineage tracking, schema validation, ontology annotation, workflow integration, and lakehouse-style querying.

Matplotlib Visualization Guide

K-Dense-AI/scientific-agent-skills

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Molecular Dynamics Toolkit

molecular-dynamics

K-Dense-AI/scientific-agent-skills

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

Neuropixels Analysis Toolkit

neuropixels-analysis

K-Dense-AI/scientific-agent-skills

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

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