技能 数据科学 科学数据报告与可复现性

科学数据报告与可复现性

v20260724
epsl-reporting-and-reproducibility
本指南旨在指导地球和行星科学领域的作者提升研究成果的可复现性。它详细规定了如何构建补充材料、数据表格和代码版本,并指导将数据上传至专业的社区知识库(如PANGAEA、Zenodo)。核心目标是确保论文中的所有结论和图表,都可以被读者独立验证和重现。
获取技能
457 次下载
概览

Reporting & Reproducibility (epsl-reporting-and-reproducibility)

The letters format pushes almost everything load-bearing but non-narrative — full analytical tables, method details, standards data, model configurations — into the supplement and the repositories. That makes the supplement and deposit part of the reviewed science, not an afterthought. EPSL sits inside Elsevier's research-data framework (data statements, repository linking), and its communities run mature FAIR infrastructure; reviewers know the canonical archive for each data type and notice absences. Re-check the current mandate wording on the official Guide for Authors.

When to trigger

  • Assembling supplementary text, tables, and figures
  • Writing the data-availability statement and choosing repositories
  • Depositing geochemical tables, waveforms, paleomagnetic data, model code, or mission-derived products
  • Making sure a reader could re-derive every figure and headline number

What to build

  1. A methods supplement that stands alone. Instrumentation, chemistry/procedures, standards with measured-vs-accepted values, blank records, correction sequence, and reduction software with versions — enough that a peer lab could replicate the campaign.
  2. Complete data tables. Every analysis (not just plotted ones), every correction applied, with units, σ-levels, and metadata columns (coordinates, sample IDs, stratigraphic height); machine- readable formats, not PDF-only.
  3. A data-availability statement with resolvable identifiers. DOIs/accessions, not "available on request" — Elsevier's data policy and the community both treat that phrase as a red flag.
  4. Code and models. Reduction scripts, inversion configurations, and model input decks deposited (Zenodo or equivalent) with versions pinned; state the random seed for stochastic steps.
  5. Restricted material handled explicitly. Mission data under embargo or proprietary industry data: say what is withheld, why, and the release path.

Deposition routing: data type → community repository

Data type Expected archive Note
Geochemistry / isotope tables EarthChem Library (DOI per dataset) the NSF-backed geochemistry standard
Marine, paleoclimate, observational Earth data PANGAEA editor-curated, DOI-issuing, FAIR-aligned
Seismic waveforms / station products IRIS / EarthScope services cite network DOIs
Paleomagnetic / rock-magnetic data MagIC the community's designated archive
Planetary mission data / derived products NASA PDS (or ESA PSA) cite the archive bundle, instrument, version
Geochronology reduction files EarthChem / Zenodo include tracer + constants metadata
Code, model configs, notebooks Zenodo / GitHub+Zenodo DOI pin versions; archive the release, not the repo URL

Worked micro-example (illustrative — the deposit for the ash-bed geochronology Letter)

A reviewer-ready package for the extinction-tempo study (illustrative):

  • Supplement: full CA-ID-TIMS procedure, tracer and decay constants with citations, standards table (measured vs accepted, per session), blank records, and the age-model priors.
  • EarthChem: the complete grain-by-grain U-Pb table — including the two excluded inherited grains — with coordinates and bed heights, under its own DOI.
  • Zenodo: the Bayesian eruption-tempo model config and scripts, seeded, versions pinned; rerunning it regenerates Figure 3 and the headline 66.021 Ma age exactly.
  • Statement: "All isotopic data are available at EarthChem (DOI: illustrative); model code at Zenodo (DOI: illustrative)." One sentence, two resolvable identifiers.

The self-test before submission: hand the supplement + deposits to a colleague and ask them to re-derive the abstract's numbers. Anything they cannot re-derive is under-reported.

Referee-pushback patterns and the venue-specific fix

  • "Data availability inadequate." → Replace "on request" with the discipline archive + DOI; EPSL's communities have a canonical home for nearly every data type.
  • "Methods insufficient to assess the ages." → Move the full traceability chain (standards, blanks, constants, software versions) into the supplement.
  • "Figures cannot be reproduced from the tables." → Deposit the reduction scripts and confirm the pipeline regenerates every exhibit.

Anti-patterns

  • "Data available from the corresponding author upon reasonable request"
  • Plotted analyses only, with rejected/excluded data invisible everywhere
  • PDF-only data tables that cannot be re-used
  • Waveforms, paleomag, or mission products parked in a generic repository when a designated community archive exists
  • A supplement assembled the night before submission, drifting from the manuscript's numbers

Output format

【Supplement】methods + standards + blanks + full tables? [Y/N]
【Deposit】data type → repository + DOI/accession (list)
【Statement】written with resolvable identifiers? [Y/N]
【Code/models】archived, versioned, seeded? [Y/N or N/A]
【Re-derivable】abstract numbers regenerate from deposit? [Y/N]
【Next】epsl-writing-style

Supplementary resources

信息
Category 数据科学
Name epsl-reporting-and-reproducibility
版本 v20260724
大小 5.88KB
更新时间 2026-07-28
语言